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Series GSE135319 Query DataSets for GSE135319
Status Public on Apr 19, 2021
Title Activation of ERRĪ³ enhances mitochondrial and sarcomere maturation in human induced pluripotent stem cell-derived cardiomyocytes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We identified two cardiac maturation stimulators from 9,048 compounds using Troponin I1 (TNNI1) and Troponin I3 (TNNI3) double reporter hiPSC-derived CMs. An estrogen-related receptor gamma (ERRĪ³)-specific agonist increased the size of hiPSC-CMs and their mitochondrial content and enhanced their mitochondrial function. In addition, combination of this agonist with an inhibitor of S-phase kinase-associated protein 2 (SKP2) increased the TNNI3 expression more highly than previous methods and enhanced cardiac maturation-related gene expression profiles.
 
Overall design mRNA profiles of hiPSC-CMs with conpounds were generated by deep sequencing, in triplicate, using Illumina Nextseq 500.
 
Contributor(s) Miki K, Monjo T, Andou T, Sasaki M, Lucena-Cacace A, Nishimoto T, Yoshida Y
Citation(s) 34155205
Submission date Aug 02, 2019
Last update date Jul 14, 2021
Contact name Yoshinori Yoshida
E-mail(s) yoshinor@cira.kyoto-u.ac.jp
Organization name Kyoto University
Street address 53, Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (12)
GSM4005256 DMSO-1
GSM4005257 T112 (d8-16)-1
GSM4005258 T112 (d8-16) + T623 (d10-16)-1
Relations
BioProject PRJNA558440

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135319_50_HTseq_tophat2.DESeq2_normalized.txt.gz 2.7 Mb (ftp)(http) TXT
GSE135319_51_HTseq_STAR.DESeq2_normalized.txt.gz 2.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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