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Series GSE135715 Query DataSets for GSE135715
Status Public on Aug 13, 2019
Title 4C analysis of 9p21 interaction network in HEK TE cells
Organism Homo sapiens
Experiment type Other
Summary 4C was performed to identify genomic loci interacting with the 9P21 locus. Subsequently, the effect on cell transformation was furhter investigated upon knockdown/overexpression of the selected candidate targets.
Overall design HEK TE cells were analyzed using 4C experimental protocol and 5 viewpoints designed specifically on the 9p21 region.
Contributor(s) Baietti MF, Sablina A
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Submission date Aug 12, 2019
Last update date Jan 19, 2021
Contact name Peihua Zhao
Organization name KU Leuven
Street address Herestraat 49
City Leuven
ZIP/Postal code 3000
Country Belgium
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (8)
GSM4026855 HEK TE VP6
GSM4026856 HEK TE VP7
GSM4026857 HEK TE VP8
This SubSeries is part of SuperSeries:
GSE135719 Loss of 9p21 regulatory hub promotes kidney cancer progression by upregulating HOXB13
BioProject PRJNA559841
SRA SRP218111

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135715_RAW.tar 202.1 Mb (http)(custom) TAR (of BED, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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