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| Status |
Public on Aug 15, 2019 |
| Title |
Temporal analysis of mRNA from panicle tissue from field grown rice under high nighttime temperatures |
| Organism |
Oryza sativa Indica Group |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
A IR64 variety of rice was grown in a field plot at the International Rice Research Institute (IRRI) in the Philippines. The data gained from the experiment provides information of the daily transcriptional changes occur in panicle tissue during an important developmental period under control and warm night temperatures.
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| Overall design |
When the plants reached 50% flowering, panicle tissue was harvest at ~3 hour intervals for 24 hours. There are 8 timepoints with 4 replicates at each timepoint with two conditions (Control and WNT) for a total of 64 samples. Additionally there is a gradient set with consists of 2 timepoints with 4 replicates and 4 conditions (24C, 26C, 28C, and 30C).
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| Contributor(s) |
Desai J, Lawas LM, Valente AM, Leman AR, Grinevich DO, Jagadish SV, Doherty CJ |
| Citation(s) |
34155145 |
| |
| Submission date |
Aug 14, 2019 |
| Last update date |
Jul 14, 2021 |
| Contact name |
Jigar Desai |
| E-mail(s) |
jdesai@ncsu.edu
|
| Phone |
7042147914
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| Organization name |
NCSU
|
| Department |
Biochemistry
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| Lab |
Doherty Lab
|
| Street address |
128 Polk Hall
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| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27695 |
| Country |
USA |
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| Platforms (1) |
| GPL21027 |
Illumina HiSeq 2500 (Oryza sativa Indica Group) |
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| Samples (96)
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| Relations |
| BioProject |
PRJNA560271 |
| SRA |
SRP218377 |
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