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Series GSE136027 Query DataSets for GSE136027
Status Public on Jun 16, 2020
Title Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis
Organism Oryzias latipes
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin accessibility of nine embryonic samples was profiled using transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) to identify potential regulatory elements.
 
Overall design ATAC-seq libraries of 18 medaka embryonic stages.
 
Contributor(s) Tu Q, Li Y, Liu Y
Citation(s) 32591361
Submission date Aug 19, 2019
Last update date Jul 27, 2020
Contact name Yongjie Liu
E-mail(s) liuyongjie15@mails.ucas.ac.cn
Organization name Institute of Genetics and Developmental Biology
Street address No. 1 West Beichen Road, Chaoyang District
City Beijing
ZIP/Postal code 100101
Country China
 
Platforms (1)
GPL25587 HiSeq X Ten (Oryzias latipes)
Samples (18)
GSM4039581 stage 11 rep 1
GSM4039582 stage 15 rep 1
GSM4039583 stage 19 rep 1
Relations
BioProject PRJNA560968
SRA SRP218862

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136027_RAW.tar 1.8 Gb (http)(custom) TAR (of BW)
GSE136027_dev_peak.bed.gz 1.8 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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