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Series GSE13626 Query DataSets for GSE13626
Status Public on Oct 27, 2009
Title Comparison of gene expression in melanoma of wild-type and VAP-1 -/- mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary Vascular adhesion protein-1 (VAP-1) is an endothelial cell-surface protein. It is also an enzyme posessing semicarbazide-sensitive amine oxidase activity (EC. VAP-1 is involved in leukocyte traffic. To study the role of VAP-1 in tumor immunity, we compared gene expression profiles in melanomas growing in VAP-1 -/- mice and their wid-type littermates.
Overall design The B16-F10-Luc-G5 melanoma cells (Xenogen) were injected subcutaneously into abdominal area of 2 wild-type and 2 VAP-1 -/- mice. Tumors were grown until day 10 when mice were euthanized. Tumors were dissected and total RNA was isolated using the Qiagen RNA extraction kit.
Contributor(s) Marttila-Ichihara F, Auvinen K, Jalkanen S, Salmi M
Citation(s) 19789345
Submission date Nov 17, 2008
Last update date Jan 18, 2013
Contact name Kaisa Auvinen
Organization name University of Turku
Department Medicity Research Laboratory
Street address Tykistökatu 6
City Turku
ZIP/Postal code 20520
Country Finland
Platforms (1)
GPL6105 Illumina mouse-6 v1.1 expression beadchip
Samples (4)
GSM343291 Wild type 2
GSM343292 Wild type 3
GSM343293 VAP 1 KO 1
BioProject PRJNA110657

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13626_RAW.tar 5.2 Mb (http)(custom) TAR
GSE13626_rawData.txt 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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