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| Status |
Public on Nov 16, 2020 |
| Title |
SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
33332735 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| F31 CA236300 |
Development of Mithramycin Analogues to Target Transcriptional Vulnerabilities in Rhabdoid Tumor |
VAN ANDEL RESEARCH INSTITUTE |
Maggie Chasse |
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| Submission date |
Sep 13, 2019 |
| Last update date |
Feb 15, 2021 |
| Contact name |
Patrick Grohar |
| E-mail(s) |
groharp@email.chop.edu
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| Phone |
2674250494
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| Organization name |
Children's Hospital of Philadelphia
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| Street address |
3501 Civic Center Blvd
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platforms (2) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (27)
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| GSM4078521 |
BT12 cells, mithramycin 8h_A, ATAC-seq |
| GSM4078522 |
BT12 cells, mithramycin 8h_B, ATAC-seq |
| GSM4078523 |
BT12 cells, mithramycin 8h_C, ATAC-seq |
| GSM4078524 |
BT12 cells, mithramycin 18h_A, ATAC-seq |
| GSM4078525 |
BT12 cells, mithramycin 18h_B, ATAC-seq |
| GSM4078526 |
BT12 cells, mithramycin 18h_C, ATAC-seq |
| GSM4078559 |
BT12 cells, IPAc, Solv_D, ChIP-seq |
| GSM4078560 |
BT12 cells, IPAc, Solv_E, ChIP-seq |
| GSM4078561 |
BT12 cells, IPAc, Solv_F, ChIP-seq |
| GSM4078562 |
BT12 cells, IPAc, mithramycin 8h_D, ChIP-seq |
| GSM4078563 |
BT12 cells, IPAc, mithramycin 8h_E, ChIP-seq |
| GSM4078564 |
BT12 cells, IPAc, mithramycin 8h_F, ChIP-seq |
| GSM4078565 |
BT12 cells, IPAc, mithramycin 18h_D, ChIP-seq |
| GSM4078566 |
BT12 cells, IPAc, mithramycin 18h_E, ChIP-seq |
| GSM4078567 |
BT12 cells, IPAc, mithramycin 18h_F, ChIP-seq |
| GSM4078582 |
BT12 cells, SolvA, RNA-seq |
| GSM4078583 |
BT12 cells, SolvB, RNA-seq |
| GSM4078584 |
BT12 cells, SolvC, RNA-seq |
| GSM4078585 |
BT12 cells, mithramycin 8h_MMAA, RNA-seq |
| GSM4078586 |
BT12 cells, mithramycin 8h_MMAB, RNA-seq |
| GSM4078587 |
BT12 cells, mithramycin 8h_MMAC, RNA-seq |
| GSM4078588 |
BT12 cells, mithramycin 18h_MMAA, RNA-seq |
| GSM4078589 |
BT12 cells, mithramycin 18h_MMAB, RNA-seq |
| GSM4078590 |
BT12 cells, mithramycin 18h_MMAC, RNA-seq |
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| This SuperSeries is composed of the following SubSeries: |
| GSE137397 |
SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor [ATAC-seq] |
| GSE137399 |
SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor [ChIP-seq] |
| GSE137403 |
SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor [RNA-seq] |
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| Relations |
| BioProject |
PRJNA565374 |
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