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| Status |
Public on Jul 08, 2020 |
| Title |
ChIP-seq from erythroid cells generated through ex vivo differentiation |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
CD34+ Haematopoietic stem cells were differentiated ex vivo to generate ChIP-seq data for machine learning of rules underlying open chromatin dynamics.
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| Overall design |
CD34+ cells were isolated from peripheral blood from three healthy donors (Two males, one female) and differentiatied ex vivo. ChIP-seq for key histopne marks (H3K27ac, H3K4me3) and transcription factors (CTCF, Gata-1) were performed at day 13 of differentiation.
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| Contributor(s) |
Downes DJ, Gosden M, Nussbaum L, Hughes JR |
| Citation(s) |
33046896 |
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| Submission date |
Sep 25, 2019 |
| Last update date |
Jan 27, 2021 |
| Contact name |
Damien Downes |
| E-mail(s) |
damien.downes@ndcls.ox.ac.uk
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| Phone |
01865222374
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| Organization name |
The University of Oxford
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| Department |
MRC Weatherall Institute of Medicine
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| Street address |
John Radcliffe Hospital
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| City |
Headington |
| State/province |
Oxfordshire |
| ZIP/Postal code |
OX3 9DU |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (18)
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| GSM4096231 |
Erythroid cells, CTCF_Don001_Ery_d13_rep1 |
| GSM4096232 |
Erythroid cells, CTCF_Don002_Ery_d13_rep1 |
| GSM4096233 |
Erythroid cells, CTCF_Don003_Ery_d13_rep1 |
| GSM4096234 |
Erythroid cells, GATA1_Don001_Ery_d13_rep1 |
| GSM4096235 |
Erythroid cells, GATA1_Don002_Ery_d13_rep1 |
| GSM4096236 |
Erythroid cells, GATA1_Don003_Ery_d13_rep1 |
| GSM4096237 |
Erythroid cells, H3K27ac_Don001_Ery_d13_rep2 |
| GSM4096238 |
Erythroid cells, H3K27ac_Don002_Ery_d13_rep2 |
| GSM4096239 |
Erythroid cells, H3K27ac_Don003_Ery_d13_rep2 |
| GSM4096240 |
Erythroid cells, H3K4me3_Don001_Ery_d13_rep1 |
| GSM4096241 |
Erythroid cells, H3K4me3_Don002_Ery_d13_rep1 |
| GSM4096242 |
Erythroid cells, H3K4me3_Don003_Ery_d13_rep1 |
| GSM4096243 |
Erythroid cells, Input_Don001_Ery_d13_rep2 |
| GSM4096244 |
Erythroid cells, Input_Don001_Ery_d13_rep1 |
| GSM4096245 |
Erythroid cells, Input_Don002_Ery_d13_rep2 |
| GSM4096246 |
Erythroid cells, Input_Don002_Ery_d13_rep1 |
| GSM4096247 |
Erythroid cells, Input_Don003_Ery_d13_rep2 |
| GSM4096248 |
Erythroid cells, Input_Don003_Ery_d13_rep1 |
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| This SubSeries is part of SuperSeries: |
| GSE137983 |
Characterization of erythroid cells generated through ex vivo differentiation |
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| Relations |
| BioProject |
PRJNA574100 |
| SRA |
SRP223248 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE137982_RAW.tar |
7.8 Gb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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