NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE138002 Query DataSets for GSE138002
Status Public on May 07, 2020
Title scRNA-seq of the developing human retina
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Time-series of single-cell RNA-sequencing performed on stem cell derived retinal organoids or post-mortem tissue from the developing and adult retina
 
Overall design 10x Genomics V2 single-cell RNA-sequencing
 
Contributor(s) Blackshaw S, Clark BS, Handa JT, Bremner R, Zack DJ
Citation(s) 32386599, 35259089
Submission date Sep 25, 2019
Last update date Mar 31, 2022
Contact name Brian Clark
Organization name Washington University
Department Ophthalmology and Visual Sciences
Lab Clark
Street address 660 S Euclid Ave; Campus Box #8096
City St. Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (12)
GSM4096494 24 days in culture human retinal organoid
GSM4096495 30 days in culture human retinal organoid
GSM4096496 42 days in culture human retinal organoid
Relations
BioProject PRJNA574132
SRA SRP223254

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138002_All_barcodes.csv.gz 988.5 Kb (ftp)(http) CSV
GSE138002_All_cells.mtx.gz 666.6 Mb (ftp)(http) MTX
GSE138002_Final_barcodes.csv.gz 5.0 Mb (ftp)(http) CSV
GSE138002_Final_matrix.mtx.gz 538.8 Mb (ftp)(http) MTX
GSE138002_genes.csv.gz 346.5 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap