NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE138604 Query DataSets for GSE138604
Status Public on Jul 10, 2020
Title Response of expanded human conventional and regulatory T cells to CD28 or TNFR2 costimulation [Exp2]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Immune responses depend on a dynamic balance between the opposing activities of conventional (Tconv) and regulatory (Treg) CD4+ T cells. While receptor-targeted approaches have been developed based on their modulation of Tconv cells, Tconv and Treg cells share many costimulatory receptors. We aim to determine key differential signaling events downstream of costimulation to find opportunities for selective manipulation of Tconv or Treg cells. This data set includes the transcriptomes of expanded human Tconv and Treg cells that were treated with anti-CD3, anti-CD3/CD28 or anti-CD3/TNFR2 agonistic mAbs for 24 hours.
 
Overall design Whole transcriptome analysis of expanded human conventional and regulatory T cells that were treated with anti-CD3, anti-CD3/CD28 or anti-CD3/TNFR2 agonistic mAbs (three healthy blood donors).
 
Contributor(s) de Kivit S, Mensink M, Borst J
Citation(s) 32958937
Submission date Oct 08, 2019
Last update date Jan 09, 2024
Contact name Mark Mensink
E-mail(s) m.mensink@lumc.nl
Organization name Leiden University Medical Center
Department Immunology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (18)
GSM4114167 Tconv_aCD3_Donor2
GSM4114168 Tconv_aCD3-CD28_Donor2
GSM4114169 Tconv_aCD3-TNFR2_Donor2
This SubSeries is part of SuperSeries:
GSE138605 Response of expanded human conventional and regulatory T cells to CD3/CD28-mediated activation (Exp1) and to CD28 or TNFR2 costimulation (Exp2)
Relations
BioProject PRJNA576497
SRA SRP224819

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138604_readcounts1.txt.gz 1.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap