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Series GSE138868 Query DataSets for GSE138868
Status Public on Dec 18, 2021
Title CLIP of mRNA capping enzyme CMTR2 in drosophila melanogaster
Organism Drosophila melanogaster
Experiment type Other
Summary The mRNA cap structure consists of the m7G "cap0" linked to the 5'-most nucleotide of the initial mRNA. The first two nucleotides of mRNA can be 2'-O-Ribose modified to form cap1 or cap2 structures. Here, mRNA was sequenced after CLIP with tagged recombinant CMTR2 enzyme and compared to input RNA.
 
Overall design CLIP of mRNA capping enzymes CMTR2 in drosophila melanogaster
 
Contributor(s) Archer N, Bodi Z, Fray R, Soller M
Citation(s) 35260552
Submission date Oct 15, 2019
Last update date Mar 10, 2022
Contact name Nathan Archer
E-mail(s) nathan.archer1@nottingham.ac.uk
Organization name University of Nottingham
Department School of Veterinary Medicine and Sciences
Lab ARCHER
Street address Sutton Bonington
City Loughborough
State/province East Midlands
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (6)
GSM4120741 D_CLIP_I_1_S13_R1_001
GSM4120742 D_CLIP_I_2_S14_R1_001
GSM4120743 D_CLIP_I_3_S15_R1_001
Relations
BioProject PRJNA577645
SRA SRP225710

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138868_PC1_A_B.tsv.gz 202.2 Kb (ftp)(http) TSV
GSE138868_PC2_A_B.tsv.gz 423.4 Kb (ftp)(http) TSV
GSE138868_cmtr1_CLIP_normalised_counts.csv.gz 77.1 Kb (ftp)(http) CSV
GSE138868_cmtr2_CLIP_normalised_counts.csv.gz 129.5 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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