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| Status |
Public on Oct 16, 2020 |
| Title |
Identification of HSF1- target genes involved in thermal stress in the Pacific oyster Crassostrea gigas by ChIP-seq |
| Organism |
Magallana gigas |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
The Pacific oyster Crassostrea gigas, a commercially important species inhabiting the intertidal zone, can tolerate temperature fluctuations. Heat shock transcription factor 1 (HSF1) plays an important role in the process of resistance of thermal stress. However, HSF1 has not been fully characterized in the Pacific oyster. C. gigas with an expansion of heat shock protein (HSP) 70. In this study, we analyzed genes regulated by HSF1 in response to heat shock by Chromatin immunoprecipitation followed sequencing (ChIP-seq), determined the expression patterns of target genes by qRT-PCR, and validated the regulatory relationship between one HSP70 and HSF1. We found 916 peaks corresponding to specific binding sites of HSF1, and peaks were annotated to nearest genes. In Gene Ontology analysis, HSF1 target genes was related to signal transduction, energy production, and response to biotic stimulus. Four HSP70 genes, two HSP40 genes, and one small HSP gene exhibited binding to HSF1. One HSP70 with a binding site in the promoter region was validated to be regulated by HSF1 under heat shock. These results provide a basis for future studies aimed at determining the mechanisms underlying thermal tolerance and provide insights into gene regulation in the Pacific oyster.
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| Overall design |
Examination of two samples for HSF1-regulated gene detection
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| Contributor(s) |
Zhu Q, Liu Y |
| Citation missing |
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| Submission date |
Oct 16, 2019 |
| Last update date |
Oct 24, 2020 |
| Contact name |
Youli Liu |
| E-mail(s) |
liuyouli15@mails.ucas.ac.cn
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| Organization name |
Institute of Oceanology
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| Street address |
Nanhai Road No. 7
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| City |
Qingdao |
| ZIP/Postal code |
266071 |
| Country |
China |
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| Platforms (1) |
| GPL27626 |
Illumina HiSeq 2500 (Crassostrea gigas) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA577897 |
| SRA |
SRP225913 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE138959_RAW.tar |
20.0 Kb |
(http)(custom) |
TAR (of BED) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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