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Series GSE139206 Query DataSets for GSE139206
Status Public on Oct 19, 2022
Title Host metabolic reprogramming during immune activation promotes intracellular bacterial survival (2DG)
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Experiment type Expression profiling by high throughput sequencing
Summary Intracellular pathogens, such as Salmonella enterica serovar Typhimurium (S.Tm), are able to sense and respond to a changing host cell environment. Macrophages exposed to microbial products undergo metabolic changes that are increasingly understood to drive a productive inflammatory response. However, the role of macrophage metabolic reprogramming in bacterial adaptation to the intracellular environment has not been explored. Here we show that changes in host metabolic state serve as a signal detected byS.Tm. Using metabolic profiling and dual RNA-seq, we show that succinate accumulates in infected macrophages and is sensed by intracellular S.Tm to promote induction of virulence genes. Succinate uptake by the bacterium drives induction of pmrAB-dependent genes and SPI-2 virulence-associated regulon. S.Tm lacking the DcuB transporter for succinate uptake display impaired intracellular survival. Our work demonstrates that accumulation of metabolic intermediates, necessary for macrophage activation, promote intracellular survival of pathogens, opening a new realm of metabolic host-pathogen crosstalk.
 
Overall design 4 bacterial culture samples of Salmonella enterica serovar Typhimurium (WT or manZ bacteria, with or without 2-DG) in triplicates
Web link https://pubmed.ncbi.nlm.nih.gov/33479153/
 
Contributor(s) Rosenberg G, Yehezkel D, Nissani N, Hen-Avivi S, Brenner S, Itkin M, Malitsky S, Bossel Ben-Moshe N, Avraham R
Citation(s) 33479153
Submission date Oct 21, 2019
Last update date Jan 19, 2023
Contact name Roi Avraham
E-mail(s) roi.avraham@weizmann.ac.il
Organization name Weizmann Institute of Science
Street address Herzl St 234
City Rehovot
ZIP/Postal code 7610001
Country Israel
 
Platforms (1)
GPL27640 Illumina MiniSeq (Salmonella enterica subsp. enterica serovar Typhimurium)
Samples (12)
GSM4134030 WT_2DG_1
GSM4134031 WT_2DG_2
GSM4134032 WT_2DG_3
This SubSeries is part of SuperSeries:
GSE139208 Host succinate is a signal for activation of Salmonella virulence during intracellular infection
Relations
BioProject PRJNA578745
SRA SRP226511

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139206_RAW.tar 360.0 Kb (http)(custom) TAR (of TXT)
GSE139206_manz_data_matrix.txt.gz 126.6 Kb (ftp)(http) TXT
GSE139206_wt_data_matrix.txt.gz 142.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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