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Series GSE140289 Query DataSets for GSE140289
Status Public on Oct 16, 2020
Title RNA seq of mammary epithelial cells with loss-of-function Pten mutations
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The PTEN tumor suppressor controls cell death and survival by regulating functions of various molecular targets. Whilst the role of PTEN lipid-phosphatase activity on PtdIns(3,4,5)P3 and inhibition of PI3K pathway is well characterized, the biological relevance of PTEN protein-phosphatase activity remains undefined. Using knock-in (KI) mice harbouring cancer-associated and functionally relevant missense mutations, we show that although loss of PTEN lipid-phosphatase function cooperates with oncogenic PI3K to promote rapid mammary tumorigenesis, the additional loss of PTEN protein-phosphatase activity triggered an extensive cell death response evident in early and advanced mammary tumors. Omics and drug-targeting studies revealed that PI3Ks act to reduce glucocorticoid receptor (GR) levels, which are rescued by loss of PTEN protein-phosphatase activity to restrain cell survival. The dual regulation of GR by PI3K and PTEN functions as a rheostat that can be exploited for the treatment of PTEN-loss driven cancers.
 
Overall design 4 biological replicates of RNA samples from mammary epithelial cells (luminal and basal) of Pten KI mice
 
Contributor(s) Papa A, Yip HY
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Submission date Nov 12, 2019
Last update date Oct 06, 2020
Contact name David Richard Powell
E-mail(s) david.powell@monash.edu
Organization name Monash University
Department Bioinformatics Platform
Street address Wellington Road
City Clayton
State/province VIC
ZIP/Postal code 3800
Country Australia
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (24)
GSM4158913 Pten+/+ luminal_1 [3_4382WT_L_S1]
GSM4158914 Pten+/+ basal_1 [4_4382WT_B_S2]
GSM4158915 Pten+/+ luminal_2 [5_4338WT_L_S3]
Relations
BioProject PRJNA589099
SRA SRP229629

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140289_ReverseStrandedCounts-withNames.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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