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Series GSE140300 Query DataSets for GSE140300
Status Public on Nov 14, 2019
Title Transcriptional changes involved in inhibition of biofilm formation by ε-Polylysine in Salmonella Typhimurium
Platform organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Sample organism Salmonella enterica subsp. enterica serovar Typhimurium
Experiment type Expression profiling by array
Summary Salmonella Typhimurium is one of the major foodborne pathogens due to its biofilm formation on food contact surfaces. A polymer of positively charged lysine, ε-Polylysine has been demonstrated to inhibit biofilm formation of both Gram-positive and -negative bacteria. To elucidate the mechanism for inhibition of biofilm formation by ε-Polylysine, transcriptional profiles were compared between the cells before and after treatment with ε-Polylysine in Salmonella Typhimurium. A genome-wide DNA microarray analysis was performed after cultivation in 0.1% bacto soytone in the presence of 0.001% ε-Polylysine at 30°C for 2 h. Genes involved in curli and cellulose production, quorum sensing, and flagellar motility were down-regulated, whereas genes associated with colanic acid synthesis were up-regulated. The data from microarray was validated by RT-qPCR. Furthermore, production of colanic acid in S. Typhimurium decreased in the presence of ε-Polylysine. The outcome of this study provides a basic understanding of the anti-biofilm mechanisms of ε-Polylysine and may contributes to develop new disinfectant to control biofilm during food manufacturing and storage.
 
Overall design Gene expression during initial adhension (2 hours) were measured with or withour exposure to 0.001% ε-Polylysine. Three dependent experiments were performed at each time.
 
Contributor(s) Shen C, Islam T, Masuda Y, Honjoh K, Miyamoto T
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 13, 2019
Last update date Nov 16, 2019
Contact name Cunkuan Shen
E-mail(s) sck12341@gmail.com
Phone 09013614282
Organization name kyushu university
Street address Motooka
City fukuoka nishi ward
State/province fukuoka
ZIP/Postal code 8190385
Country Japan
 
Platforms (1)
GPL27746 Agilent-045986 Salmonella Typhimurium LT2
Samples (9)
GSM4159092 MD_001: Control_0h_rep1
GSM4159093 MD_002: Control_0h_rep2
GSM4159094 MD_003: Control_0h_rep3
Relations
BioProject PRJNA589476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140300_RAW.tar 7.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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