NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE140735 Query DataSets for GSE140735
Status Public on Feb 03, 2020
Title The transcriptional responses of C. glutamicum to the secretory production of two different heterologous proteins
Organism Corynebacterium glutamicum ATCC 13032
Experiment type Expression profiling by array
Summary High level secretion of proteins via the Sec protein export pathway leads to secretion stress, a phenomenon that is thought to be caused by the accumulation of incompletely or misfolded proteins at the membrane-cell envelope interface. We have analyzed the transcriptional responses of C. glutamicum to the secretory production of two different heterologous proteins and found that, in both cases, the expression of the gene encoding a homologue of the extracytosolic HtrA protease was highly upregulated.
 
Overall design Transcriptional responses of C. glutamicum to the secretory production of heterologous proteins were determined in 3 sets. Set 1 comprises 3 biological replicates of C.glutamicum WT carrying plasmid for expression of AmyE without signal peptide. Set 2 comprises 3 biological replicates of C.glutamicum WT carrying plasmid for expression of AmyE fused with signal peptide. Set 3 comprises 3 biological replicates of C.glutamicum WT carrying plasmid for expression of cutinase fused with NprE signal peptide. In all sets/replicates the induced culture was compared to the uninduced culture.
 
Contributor(s) Jurischka S, Polen T, Freudl R
Citation(s) 31964372
Submission date Nov 20, 2019
Last update date Apr 14, 2021
Contact name Tino Polen
E-mail(s) t.polen@fz-juelich.de
Organization name Forschungszentrum Jülich GmbH
Department IBG-1: Biotechnology
Street address Leo Brandt Str.
City Juelich
State/province NRW
ZIP/Postal code 52425
Country Germany
 
Platforms (1)
GPL9860 FZ_IBT1_Cglutamicum_10K_ver2
Samples (9)
GSM4182913 Set1_WT_AmyE_noSP_ind_vs_unind_I
GSM4182914 Set1_WT_AmyE_noSP_ind_vs_unind_II
GSM4182915 Set1_WT_AmyE_noSP_ind_vs_unind_III
Relations
BioProject PRJNA590712

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140735_RAW.tar 8.2 Mb (http)(custom) TAR (of GPR)
GSE140735_Ratios_with_annotation.xlsx 912.5 Kb (ftp)(http) XLSX
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap