|
| Status |
Public on Dec 31, 2020 |
| Title |
Atypical chromatin structure of immune-related genes expressed in chicken erythrocytes [RNA-seq] |
| Organism |
Gallus gallus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Transcriptional regulation is impacted by multiple layers of genome organization. Here, we report that immune genes were associated with H3K4me3 and H3K27ac. In conjunction with next-generation DNA, RNA sequencing, chromatin immunoprecipitation-DNA sequencing and FAIRE sequencing, we identified the active chromosomal compartments and determined their structural signatures in relation to expression levels.
|
| |
|
| Overall design |
Examination of gene expression in 6C2 line (a transformed chicken erythrocyte precursor cell line).
|
| |
|
| Contributor(s) |
Jahan S, Xu W, Beacon TH, Ilic A, Davie JR |
| Citation(s) |
31276625 |
| |
| Submission date |
Nov 26, 2019 |
| Last update date |
Jan 16, 2023 |
| Contact name |
James Ronald Davie |
| E-mail(s) |
jim.davie@umanitoba.ca
|
| Phone |
2042723174
|
| Organization name |
University of Manitoba
|
| Department |
Biochemistry and Medical Genetics
|
| Street address |
745 Bannatyne Avenue, RM 333A
|
| City |
Winnipeg |
| State/province |
Manitoba |
| ZIP/Postal code |
R3E 0J9 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL21224 |
AB 5500xl Genetic Analyzer (Gallus gallus) |
|
| Samples (2) |
| GSM4192442 |
6C2 cells, cell sample s1, Total RNAseq |
| GSM4192443 |
6C2 cells, cell sample s2, Total RNAseq |
|
| This SubSeries is part of SuperSeries: |
| GSE141015 |
Atypical chromatin structure of immune-related genes expressed in chicken erythrocytes |
|
| Relations |
| BioProject |
PRJNA591779 |
| SRA |
SRP233277 |
