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Series GSE142565 Query DataSets for GSE142565
Status Public on May 31, 2021
Title Physiological and transcriptomic analyses reveal sulfur is essential for cadmium detoxification and accumulation in poplar leaves
Organism Populus deltoides
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Although poplars are good candidates for the phytoremediation of cadmium (Cd)-polluted soils and sulfur is a key player in modulating Cd detoxification and accumulation in plants, the physiological and molecular mechanisms underlying sulfur-mediated Cd accumulation remain largely unknown. To investigate physiological and transcriptomic regulation mechanisms of poplars in response to Cd exposure and different sulphate (S) supply levels, Populus deltoides saplings were exposed to either 0 or 50 µM Cd together with one of low, moderate and high S levels. Cd was accumulated in the leaves of Cd-exposed poplars under moderate S condition, and its accumulation is inhibited by low S but tended to increase by high S. Sulfur nutrition became deficient in Cd-treated leaves, and it was aggravated by low S but improved by high S. Concentrations of cysteine and glutathione were increased in Cd-treated leaves, and the Cd-induced increases were limited by low S but stimulated by high S. In line with the physiological changes, a number of mRNAs and microRNAs (miRNAs) involved in Cd accumulation and sulfur assimilation were identified and the miRNAs-mRNAs networks were dissected. In the networks, miR395 and miR399 members were identified as hub miRNAs and their targets were ATP sulfurylase 3 (ATPS3), and phosphate 2 (PHO2) and beta galactosidase 1 (BGAL1), respectively. These results suggest that Cd-induced changes in Cd accumulation and sulfur assimilation are exacerbated by low S but alleviated by high S supply, and that miRNAs-mRNAs regulatory networks play pivotal roles in sulfur-mediated Cd detoxification and accumulation in poplars.
 
Overall design Each group of the six plants supplied with (0 (low, L), 100 (middle, M), and 1500 (high, H) µM) for 12 days. Afterwards, the plants in each group were further divided equally into two subgroups and exposed to either 0 (-Cd) or 50 (+Cd) μM CdCl2 together with the S treatments for 21 additional days.
 
Contributor(s) Shi W, Liu W, Ma C, Zhang Y, Ding S, Yu W, Deng S, Zhou J, Li H, Luo Z
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Submission date Dec 24, 2019
Last update date Jun 01, 2021
Contact name Hong Yu Zhang
E-mail(s) zhangyuhong1112@126.com
Organization name Chinese Academy of Forestry
Department Research Institute of Forestry
Lab State Key Laboratory of Tree Genetics and Breeding
Street address Qinglongqiao Street
City Beijing
ZIP/Postal code 100091
Country China
 
Platforms (2)
GPL20012 Illumina HiSeq 2000 (Populus deltoides)
GPL27948 Illumina HiSeq 2500 (Populus deltoides)
Samples (38)
GSM4231970 minus CdL1 mRNA
GSM4231971 minus CdL2 mRNA
GSM4231972 minus CdL3 mRNA
Relations
BioProject PRJNA597470
SRA SRP238682

Download family Format
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Supplementary file Size Download File type/resource
GSE142565_RAW.tar 51.2 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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