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Series GSE143361 Query DataSets for GSE143361
Status Public on Jan 10, 2020
Title ALaP-seq and RNA-seq analyses of paraquat treated mESCs
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary To address the roles of PML bodies in transcription under stress condition, we performed ALaP-seq and RNA-seq with paraquat treated mESCs.
 
Overall design Paraquat treated mESCs were analyzed by ALaP-seq or RNA-seq.
 
Contributor(s) Kurihara M, Kato K, Sanbo C, Shigenobu S, Ohkawa Y, Fuchigami T, Miyanari Y
Citation(s) 32353257
Submission date Jan 09, 2020
Last update date May 02, 2020
Contact name Misuzu Kurihara
E-mail(s) kmisuzu1018@gmail.com, miyanari@nibb.ac.jp
Organization name National Institute for Basic Biology
Street address 5-1 Higashiyama, Myodaiji
City Okazaki
State/province Aichi
ZIP/Postal code 444-8787
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM4257619 ALaP-PMLwt_para+_H2O2+_rep1
GSM4257620 ALaP-PMLwt_para+_H2O2+_rep2
GSM4257621 WTpara+_RNA-seq_rep1
This SubSeries is part of SuperSeries:
GSE135563 Dissecting roles of PML bodies by genome-wide profiling of PML body-associated regions
Relations
BioProject PRJNA600225
SRA SRP240907

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143361_Para.alap.mESC.chrM.q20.PCR.bk.bam.bin30.SES-subtract.sm300.bigwig 601.0 Mb (ftp)(http) BIGWIG
GSE143361_RNA-seq_edgeR.WtPara_vs_KOPara.txt.gz 1.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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