GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE14535 Query DataSets for GSE14535
Status Public on Jan 24, 2009
Title mRNP-mRNA Association Map (Tier I - G10, HuR, Imp, PABP)
Project ENCODE
Organism Homo sapiens
Experiment type Other
Summary In eukaryotic organisms gene regulatory networks require an additional level of coordination that links transcriptional and post-transcriptional processes. Messenger RNAs have traditionally been viewed as passive molecules in the pathway from transcription to translation. However, it is now clear that RNA-binding proteins play a major role in regulating multiple mRNAs in order to facilitate gene expression patterns. These tracks show the associated mRNAs that co-precipitated with the targeted RNA-binding proteins HuR, IMP-1 and PABP using RIP-Chip (Ribonomic) profiling

Keywords: RIP-Chip

For data usage terms and conditions, please refer to and
Overall design Replicates for IPs comparable IP-inputs performed independently in each of the ENCODE Tier 1 cell lines.
Web link
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA30709
Submission date Jan 23, 2009
Last update date Feb 18, 2019
Contact name Sridar V Chittur
Phone 518-591-7215
Organization name SUNY-University at Albany
Department Center for Functional Genomics
Lab Microarray Core
Street address One Discovery Drive, CRC 342G
City Rensselaer
State/province NY
ZIP/Postal code 12144
Country USA
Platforms (1)
GPL5175 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Samples (33)
GSM363723 K562_Input_1
GSM363724 K562_Input_2
GSM363725 K562_IP-G10_1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14535_ELAVL1.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.3 Mb (ftp)(http) BED
GSE14535_ELAVL1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.3 Mb (ftp)(http) BED
GSE14535_IGF2BP1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.2 Mb (ftp)(http) BED
GSE14535_PABPC1.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.2 Mb (ftp)(http) BED
GSE14535_PABPC1.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.2 Mb (ftp)(http) BED
GSE14535_RAW.tar 705.2 Mb (http)(custom) TAR (of CEL)
GSE14535_README_BED.txt 1.1 Kb (ftp)(http) TXT
GSE14535_Ribonomic_Workflow.pdf 36.1 Kb (ftp)(http) PDF
GSE14535_T7Tag.GM12878.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 957.9 Kb (ftp)(http) BED
GSE14535_T7Tag.K562.gene.core.fc.pval.presAllIP_10e-256.broadPeak.bed 1.2 Mb (ftp)(http) BED
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap