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| Status |
Public on Mar 22, 2023 |
| Title |
Detection of Active Transposable Elements using Mobilome-seq on Poplar WT and ddm1 meristems in water stress conditions |
| Organism |
Populus tremula x Populus alba |
| Experiment type |
Other
|
| Summary |
Long time considered as « junk DNA », the evolutive force of transposable elements (TEs) is now well established and TEs contribute strongly to eukaryote genome plasticity. However, it is difficult to fully characterize the mobile part of a genome, or active mobilome, and tracking TE activity remains challenging. He we have applied the detection of extrachromosomal circular DNA (mobilome-seq) as a diagnostic for plant TE activity on Poplar mersitems from WT and ddm1 RNAi plants grown in normal or hydric stress conditions.
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| |
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| Overall design |
Mobilome-seq using Illumina Miseq (2x250bp)
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| |
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| Contributor(s) |
Mirouze M, Lanciano S, LeGac A, Maury S |
| Citation(s) |
34128549 |
| |
| Submission date |
Apr 01, 2020 |
| Last update date |
Mar 23, 2023 |
| Contact name |
Anne-laure Le gac |
| E-mail(s) |
annelaure.legac@gmail.com
|
| Phone |
0630777988
|
| Organization name |
Institut Curie
|
| Department |
U932
|
| Lab |
Olivier Lantz
|
| Street address |
26 rue d'ulm
|
| City |
PARIS |
| ZIP/Postal code |
75005 |
| Country |
France |
| |
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| Platforms (1) |
| GPL28340 |
Illumina MiSeq (Populus tremula x Populus alba) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA622570 |
| SRA |
SRP254941 |
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