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Series GSE14857 Query DataSets for GSE14857
Status Public on Sep 15, 2009
Title MicroRNA Profiling Identifies Potential Diagnostic and Prognostic Markers in Prostate Cancer
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Prostate cancer is the second leading cause of cancer death in the United States and Europe. Diagnosis and risk estimation of cancer recurrence is often critical with the common clinicopathologic parameters of prostate-specific antigen, tumor stage and grade. Therefore it is mandatory to develop new diagnostic and prognostic markers for prostate cancer. miRNAs have been shown to be novel markers in a series of other cancer types. We show for the first time, that good overall classification of normal and malignant prostate tissue was possible with combination of just two miRNAs (hsa-miR-205, hsa-miR-183). Further, hsa-miR-96 is shown to be associated with the recurrence-free interval after radical prostatectomy.
 
Overall design Tumor tissue and normal adjacent tissue with untreated prostate carcinoma were collected after radical prostatectomy between 2001 and 2005 at Charité University Hospital, Berlin. Matched malignant (#PC (e.g. 09PC)) and non-malignant (#PN (e.g. 09PN)) tissue samples from men (mean age 63 years, range 49-74 years; mean pre-operative concentration of prostate-specific antigen (PSA) 8.21 µg/l, range 0.92-41.9 µg/l) with untreated prostate carcinoma were profiled.
 
Contributor(s) Mollenkopf H, Jung K, Jung M, Schäfer A, Stephan C, Lein M, Kristiansen G
Citation(s) 19676045
Submission date Feb 17, 2009
Last update date Mar 20, 2012
Contact name Hans-Joachim Mollenkopf
E-mail(s) mollenkopf@mpiib-berlin.mpg.de
Phone +49 30 28460 482
Organization name Max-Planck-Institute for Infection Biology
Lab Microarray/Genomics Core Facility
Street address Charitéplatz 1
City Berlin
ZIP/Postal code 10117
Country Germany
 
Platforms (1)
GPL6955 Agilent-016436 Human miRNA Microarray 1.0 (Feature Number version)
Samples (24)
GSM371713 normal prostate 09PN
GSM371714 prostate carcinoma 09PC
GSM371715 prostate carcinoma 11PC
Relations
BioProject PRJNA112141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14857_RAW.tar 19.2 Mb (http)(custom) TAR (of XML)
GSE14857_US22502595_251643611067_S02_H.tif 100.6 Mb (ftp)(http) TIFF
GSE14857_US22502595_251643611067_S02_L.tif 100.6 Mb (ftp)(http) TIFF
GSE14857_US22502595_251643611068_S02_H.tif 100.6 Mb (ftp)(http) TIFF
GSE14857_US22502595_251643611068_S02_L.tif 100.6 Mb (ftp)(http) TIFF
GSE14857_US22502595_251643611069_S02_H.tif 100.6 Mb (ftp)(http) TIFF
GSE14857_US22502595_251643611069_S02_L.tif 100.6 Mb (ftp)(http) TIFF
Processed data included within Sample table

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