|
| Status |
Public on Jul 08, 2020 |
| Title |
lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation [RIP-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation
|
| |
|
| Overall design |
Analysis of BRD3 binding RNAs in human stem cells and definintive endoderm cells.
|
| |
|
| Contributor(s) |
Daneshvar K, Mahpour A, Mullen AC |
| Citation(s) |
32895492 |
| |
| Submission date |
Apr 21, 2020 |
| Last update date |
Oct 07, 2020 |
| Contact name |
Alan C. Mullen |
| E-mail(s) |
mullenlabmgh@gmail.com
|
| Organization name |
Massachusetts General Hospital
|
| Department |
Department of Medicine
|
| Street address |
55 Fruit St.
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02135 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (8)
|
| GSM4487788 |
BRD3 RIP-seq H1 hESC rep 2 |
| GSM4487789 |
input RNA-seq H1 hESC differentiated to definitive endoderm for 4 days |
| GSM4487790 |
IgG RIP-seq H1 hESC differentiated to definitive endoderm for 4 days |
| GSM4487791 |
BRD3 RIP-seq H1 hESC differentiated to definitive endoderm for 4 days rep 1 |
| GSM4487792 |
BRD3 RIP-seq H1 hESC differentiated to definitive endoderm for 4 days rep 2 |
|
| Relations |
| BioProject |
PRJNA627192 |
| SRA |
SRP257753 |
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