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Series GSE149252 Query DataSets for GSE149252
Status Public on Jun 30, 2020
Title Cysteine and methionine biosynthetic enzymes have distinct effects on seed nutritional quality and on molecular phenotypes associated with accumulation of a methionine-rich seed storage protein in rice.
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Summary Staple crops in human and livestock diets suffer from deficiencies in certain “essential” amino acids including methionine. With the goal of increasing methionine in rice seed, we generated a pair of “PushxPull” double transgenic lines, each containing a methionine-dense seed storage protein (2S albumin from sunflower, HaSSA) and an exogenous enzyme for either methionine (feedback desensitized cystathionine gamma synthase from Arabidopsis, AtD-CGS) or cysteine (serine acetyltransferase from E. coli, EcSAT) biosynthesis. In both double transgenic lines, the total seed methionine content was approximately 50% higher than in their untransformed parental line, Oryza sativa ssp. japonica cv. Taipei 309. HaSSA-containing rice seeds were reported to display an altered seed protein profile, speculatively due to insufficient sulfur amino acid content. However, here we present data suggesting that this may result from an overloaded protein folding machinery in the endoplasmic reticulum rather than primarily from redistribution of limited methionine from endogenous seed proteins to HaSSA. We hypothesize that HaSSA-associated endoplasmic reticulum stress results in redox perturbations that negatively impact sulfate reduction to cysteine, and we speculate that this is mitigated by EcSAT-associated increased sulfur import into the seed, which facilitates additional synthesis of cysteine and glutathione. The data presented here reveal challenges associated with increasing the methionine content in rice seed, including what may be relatively low protein folding capacity in the endoplasmic reticulum and an insufficient pool of sulfate available for additional cysteine and methionine synthesis. We propose that future approaches to further improve the methionine content in rice should focus on increasing seed sulfur loading and avoiding the accumulation of unfolded proteins in the endoplasmic reticulum.
 
Overall design 22 milkripe (10 DAF) seed samples in total; Taipei is the reference/parental line for all 5 transgenic lines; biological replicates n = 3 to 5, depending on the line
Web link https://doi.org/10.3389/fpls.2020.01118
 
Contributor(s) Whitcomb SJ, Rakpenthai A, Brückner F, Fischer A, Parmar S, Erban A, Kopka J, Hawkesford MJ, Hoefgen R
Citation(s) 32793268
Submission date Apr 23, 2020
Last update date Aug 20, 2020
Contact name Sarah J Whitcomb
Organization name USDA-ARS
Department Cereal Crops Research Unit
Street address 502 Walnut St
City Madison
State/province WI
ZIP/Postal code 53726
Country USA
 
Platforms (1)
GPL22250 Illumina HiSeq 3000 (Oryza sativa Japonica Group)
Samples (22)
GSM4494924 CGSxSSA milkripe seeds (10 DAF) rep1
GSM4494925 Taipei milkripe seeds (10 DAF) rep1
GSM4494926 Taipei milkripe seeds (10 DAF) rep2
Relations
BioProject PRJNA627732
SRA SRP258176

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Supplementary file Size Download File type/resource
GSE149252_RAW.tar 5.5 Mb (http)(custom) TAR (of TAB)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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