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| Status |
Public on Feb 27, 2021 |
| Title |
Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation |
| Organism |
Phascolarctos cinereus |
| Experiment type |
Methylation profiling by high throughput sequencing
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| Summary |
We examined genome-wide patterns of DNA methylation from whole genome DNA methylation maps of five tissues (brain, kidney, lung, skeletal muscle, and pancreas) from one male koala and one female koala (Phascolarctos cinereus), and present the first whole genome, multi-tissue “methylome atlas” with information on tissue- and sex-specific variation of DNA methylation for a marsupial.
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| Overall design |
Whole genome bisulfite sequencing (WGBS) data from 5 tissues, brain, kidney, lung, skeletal muscle, and pancreas, for one male (Ben) and one female koala (PC) sequenced by the Ramaciotti Centre for Genomics for methylome sequencing using NovaSeq6000. 2 sequencing runs were performed per sample.
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| Contributor(s) |
Alvarez-Ponce D, Yi SV, Singh D, Sun D, Johnson RN, Alquezar-Planas DE, King AG |
| Citation(s) |
33622136 |
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| Submission date |
Apr 29, 2020 |
| Last update date |
Mar 03, 2021 |
| Contact name |
Devika Singh |
| Organization name |
Georgia Institute of Technology
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| Street address |
North Ave NW
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| City |
ATLANTA |
| State/province |
Georgia |
| ZIP/Postal code |
30332 |
| Country |
USA |
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| Platforms (1) |
| GPL26281 |
Illumina NovaSeq 6000 (Phascolarctos cinereus) |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA629340 |
| SRA |
SRP259170 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE149600_RAW.tar |
1.7 Gb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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