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Series GSE149738 Query DataSets for GSE149738
Status Public on Jul 31, 2020
Title Assessment of transcriptomic and apical responses of Daphnia magna exposed to a 3 polyethylene microplastic in a 21-day chronic study
Organism Daphnia magna
Experiment type Expression profiling by high throughput sequencing
Summary There is global concern regarding the fate and effects of microplastics in the environment, particularly in aquatic systems. In this study, ethylene acrylic acid copolymer particles were evaluated in a chronic toxicity study with the aquatic invertebrate, Daphnia magna. The study design included a natural particle control treatment (i.e., silica) in order to discern any potential physical effects of a particlefrom intrinsic toxicity of the test material. In addition to the standard endpoints of survival, growth, and reproduction, the transcriptomic profile of control and ethylene acrylic acid copolymer-exposed D. magna were evaluated at the termination of the 21-day toxicity study. No significant effects on D. magna growth, survival, or reproduction were observed in the study in comparison to both particle and untreated control groups. Significant transcriptomic alterations were induced in the highest treatment level of 2.3 x 1012 particles of the ethylene acrylic acid copolymer/ L in key pathways linked to central metabolism and energy reserves, oxidative stress, as well as ovulation and molting indicating a global transcriptomic response pattern. To put the results in perspective is challenging at this time, since, to date, microplastic environmental monitoring approaches have not been equipped to detect particles in the nano size range. However, the results of this study indicate that ethylene acrylic acid copolymer microplastics in the upper nano-size range are not expected to adversely affect D. magna growth, survival, or reproductive outcomes at concentrations up to 1012 particles/L.
 
Overall design There are 5 samples exposed to vehicle control, and 5 samples each are exposed to one of either 2.3x10^11 particles/L of ethylene acrylic acid copolymer (nanolow), 2.3x10^12 particles/L of ethylene acrylic acid copolymer (nanohigh) or 2.3x10^12 fumed silica.
 
Contributor(s) Coady KK, Davis JW, Doskey C, Burgoon L
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Submission date May 01, 2020
Last update date Jul 31, 2020
Contact name Lyle Burgoon
E-mail(s) lyle.d.burgoon@erdc.dren.mil
Organization name US Army Engineer Research and Development Center
Department Environmental Laboratory
Lab Bioinformatics and Computational Toxicology Group
Street address 216 kelly west dr
City apex
State/province nc
ZIP/Postal code 27502
Country USA
 
Platforms (1)
GPL24325 Illumina HiSeq 4000 (Daphnia magna)
Samples (20)
GSM4511507 nano_low_1
GSM4511508 nano_low_2
GSM4511509 nano_low_3
Relations
BioProject PRJNA629820
SRA SRP259943

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE149738_normalized_data.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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