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Series GSE149917 Query DataSets for GSE149917
Status Public on May 06, 2020
Title Knockdown of interleukin-33 in human fibroblasts
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Interleukin (IL)-33 is a cytokine that appears to mediate fibrosis by signaling via its receptor ST2 (IL-33R/IL1RL1). It is also, however, a protein that after synthesis is sorted to the cell nucleus, where it appears to affect chromatin folding. Here we describe a novel role for nuclear IL-33 in regulating the fibroblast phenotype in murine kidney fibrosis driven by unilateral ureteral obstruction. Transcriptional profiling of IL-33-deficient kidneys 24h after ligation revealed enhanced expression of fibrogenic genes and enrichment of gene sets involved in extracellular matrix formation and remodeling. These changes relied on intracellular effects of IL-33, because they were not reproduced by treatment with a neutralizing antibody to IL-33 that prevents IL-33R/ST2L receptor signaling nor were they observed in IL33R/ST2-deficient kidneys. To further explore the intracellular function of IL-33, we established transcription profiles of human fibroblasts, observing that knockdown of IL-33 skewed the transcription profile from an inflammatory towards a myofibroblast phenotype, reflected in higher levels of COL3A1, COL5A1 and transgelin protein, as well as lower expression levels of IL6, CXCL8, CLL7 and CCL8. In conclusion, our findings suggest that nuclear IL-33 in fibroblasts dampens the initial profibrotic response until persistent stimuli, as enforced by UUO, can override this protective mechanism.
 
Overall design Human IL-33 (#4392422) and Silencer Select Negative Control No. 2 siRNA (#4390846) were purchased from Thermo Fisher Scientific (Oslo, Norway). Fibroblasts were transfected with 30 nM siRNA using Lipofectamine RNAimax (Invitrogen, Oslo) in Opti-MEM for 12 hours followed by a change to serum free fibroblast growth medium, containing IFN-γ (100 ng/ml) and TGF-β (2ng/ml) for another 12 hours before harvest and RNA extraction.
 
Contributor(s) Haraldsen G
Citation(s) 33420328
Submission date May 05, 2020
Last update date Jan 19, 2021
Contact name Guttorm Haraldsen
E-mail(s) guttormh@medisin.uio.no
Phone +4792401962
Organization name Oslo University Hospital
Department Pathology
Lab Haraldsen-lab
Street address Sognsvannsveien 20
City Oslo
ZIP/Postal code 0027
Country Norway
 
Platforms (1)
GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol)
Samples (12)
GSM4517557 SiRNA IFNγ TGFβ_rep1
GSM4517558 Scr IFNγ_rep1
GSM4517559 SiRNA IFNγ_rep1
This SubSeries is part of SuperSeries:
GSE149918 Interleukin-33 in experimental kidney fibrosis
Relations
BioProject PRJNA630484

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE149917_RAW.tar 19.2 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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