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Status |
Public on Jun 01, 2009 |
Title |
Transcriptome analysis of bovine mammary gland tissue treated with E. coli for 6 hours |
Organism |
Bos taurus |
Experiment type |
Expression profiling by array
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Summary |
By comparison of the transcriptome profiles of infected and healthy udder tissue we analyse gene expression in the early stage of infection with E. coli 1303. Differentially expressed genes and transcription factors regulating coexpressed genes identified by SOTA clustering were used to identify key genes that define early stage of infection with E. coli 1303.
Keywords: disease state analysis
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Overall design |
10 samples, two conditions: E. coli treated for 6h vs healthy control * five replicates
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Contributor(s) |
Mitterhuemer S, Krebs S, Klose S, Wolf E, Blum H, Petzl W |
Citation(s) |
20184744 |
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Submission date |
Feb 26, 2009 |
Last update date |
Dec 17, 2012 |
Contact name |
Stefan Krebs |
E-mail(s) |
krebs-st@lmb.uni-muenchen.de
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Phone |
0049-89-2180 76715
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Organization name |
Ludwig-Maximilian University
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Department |
Gene Center
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Lab |
Lafuga Genomics
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Street address |
Feodor-Lynen-Str. 25
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City |
Munich |
ZIP/Postal code |
81377 |
Country |
Germany |
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Platforms (1) |
GPL2112 |
[Bovine] Affymetrix Bovine Genome Array |
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Samples (10)
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This SubSeries is part of SuperSeries: |
GSE15025 |
E. coli infection induces distinct local and systemic transcriptome responses in the mammary gland |
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Relations |
BioProject |
PRJNA123201 |