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Series GSE15019 Query DataSets for GSE15019
Status Public on Jun 01, 2009
Title Transcriptome analysis of bovine mammary gland tissue treated with E. coli for 6 hours
Organism Bos taurus
Experiment type Expression profiling by array
Summary By comparison of the transcriptome profiles of infected and healthy udder tissue we analyse gene expression in the early stage of infection with E. coli 1303.
Differentially expressed genes and transcription factors regulating coexpressed genes identified by SOTA clustering were used to identify key genes that define early stage of infection with E. coli 1303.

Keywords: disease state analysis
 
Overall design 10 samples, two conditions: E. coli treated for 6h vs healthy control * five replicates
 
Contributor(s) Mitterhuemer S, Krebs S, Klose S, Wolf E, Blum H, Petzl W
Citation(s) 20184744
Submission date Feb 26, 2009
Last update date Dec 17, 2012
Contact name Stefan Krebs
E-mail(s) krebs-st@lmb.uni-muenchen.de
Phone 0049-89-2180 76715
Organization name Ludwig-Maximilian University
Department Gene Center
Lab Lafuga Genomics
Street address Feodor-Lynen-Str. 25
City Munich
ZIP/Postal code 81377
Country Germany
 
Platforms (1)
GPL2112 [Bovine] Affymetrix Bovine Genome Array
Samples (10)
GSM375558 udder_infected_6h_rep1
GSM375559 udder_infected_6h_rep2
GSM375560 udder_infected_6h_rep3
This SubSeries is part of SuperSeries:
GSE15025 E. coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Relations
BioProject PRJNA123201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15019_RAW.tar 18.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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