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Series GSE150429 Query DataSets for GSE150429
Status Public on May 13, 2020
Title Transcriptional signatures of participant-derived neural progenitor cells and neurons implicate altered Wnt signaling in Phelan McDermid syndrome and autism
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We developed human induced pluripotent stem cell (hiPSC)-based models of PMS by reprogramming peripheral blood samples from individuals with PMS (n=7) and their unaffected siblings (n=6).
 
Overall design For each participant, up to three hiPSC clones were generated and differentiated into induced neural progenitor cells (hiPSC-NPCs; n=39) and induced forebrain neurons (hiPSC-neurons; n=41). Genome-wide RNA-sequencing was applied to explore transcriptional differences between PMS probands and unaffected siblings.
 
Contributor(s) Breen MS, Buxbaum JD
Citation(s) 32560742
Submission date May 12, 2020
Last update date Jun 29, 2020
Contact name Michael S Breen
Organization name Ichan School of Medicine at Mount Sinai
Department Depts. of Psychiatry, Genetics and Genomic Sciences
Street address 1468 Madison Ave
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (80)
GSM4550384 Sample_105_1_4w_hiPSC-neurons
GSM4550385 Sample_105_1_6w_hiPSC-neurons
GSM4550386 Sample_105_1_8w_hiPSC-neurons
Relations
BioProject PRJNA632023
SRA SRP261333

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE150429_counts.txt.gz 3.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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