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| Status |
Public on Jul 31, 2020 |
| Title |
Genome-wide Identification of Transcription Start Sites in Two Alphaproteobacteria |
| Organisms |
Novosphingobium aromaticivorans; Cereibacter sphaeroides 2.4.1 |
| Experiment type |
Other
|
| Summary |
The alphaproteobacteria have metabolic activities and lifestyles of societal and industrial importance that differ from those in many other bacteria. Here we report the genome-wide identification of transcription start sites (TSSs) from two alphaproteobacteria grown under conditions that result in significant changes in gene expression. TSSs that were identified as present in one condition or both will be an important resource for future studies of these, and possibly other, alphaproetobacteria.
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| Overall design |
Transcription start site data of three biological replicates Rhodobacter sphaeroides grown aerobically or photosynthetically and Novosphingobium aromaticivorans grown in glucose plus or minus vanillic acid.
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| Contributor(s) |
Myers KS, Vera JM, Lemmer KC, Lindz AM, Landick R, Noguera DR, Donohue TJ |
| Citation(s) |
32883797 |
| BioProject |
PRJNA603494 |
| |
| Submission date |
May 20, 2020 |
| Last update date |
Sep 21, 2020 |
| Contact name |
Kevin S Myers |
| E-mail(s) |
kmyers2@wisc.edu
|
| Organization name |
University of Wisconsin - Madison
|
| Department |
Great Lakes Bioenergy Research Center
|
| Street address |
5127 WEI, 1552 University Ave
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53726 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL18842 |
Illumina HiSeq 2500 (Rhodobacter sphaeroides 2.4.1) |
| GPL28624 |
Illumina HiSeq 2500 (Novosphingobium aromaticivorans) |
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| Samples (24)
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| Relations |
| SRA |
SRP245572 |
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