GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE151237 Query DataSets for GSE151237
Status Public on Dec 07, 2020
Title On the NF-Y regulome as in ENCODE (2019)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The ongoing ENCODE consortium represents a useful compendium of locations of TFs, chromatin marks, gene expression data. In previous reports, we identified modules of CCAAT-binding NF-Y with individual TFs. Here, we analyzed all 363 factors currently present: 68 with enrichment of CCAAT in their locations, 38 with overlap of peaks. New sequence-specific TFs, co-activators and co-repressors are reported. Co-association patterns correspond to specific targeted genes categorizations and gene expression changes, as assessed by RNA-seq after NF-Y inactivation. These data widen and better define a coherent model of synergy of NF-Y with selected groups of TFs and cofactors.
Overall design RNA-seq of HeLa cell line after inactivation of NF-YB.
Contributor(s) Dolfini D, Bernardini A, Ronzio M
Citation(s) 33370256
Submission date May 26, 2020
Last update date Feb 01, 2021
Contact name Diletta Dolfini
Organization name University of Milan
Department Bioscience
Street address Via Celoria, 26
City Milano
State/province MI
ZIP/Postal code 20133
Country Italy
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (6)
GSM4568940 Control RNA-seq Replicate 1
GSM4568941 Control RNA-seq Replicate 2
GSM4568942 Control RNA-seq Replicate 3
BioProject PRJNA635200
SRA SRP264849

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151237_RAW.tar 3.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap