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Series GSE151748 Query DataSets for GSE151748
Status Public on Sep 26, 2022
Title RNAseq of livers from WT mice or livers with Rbfox2 knockout fed CD
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Rbfox2 is required for maintaining hepatic metabolic homeostasis, here we carry out RNAseq to of WT and aged matched littermate Rbfox2 knockout mice under high fructose in order to determine changes in alternative splicing and mRNA expression caused by knockout of this splicing factor in this metabolic environment.
 
Overall design RNAseq of liver tissue from control diet and high fat diet (60% cal. from fat) mice harvested under fasted (16h) status
 
Contributor(s) Vernia S, Wang Y, Paterson HA
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Submission date Jun 03, 2020
Last update date Sep 26, 2022
Contact name LMS Bioinformatics Core
E-mail(s) bioinformatics@lms.mrc.ac.uk
Organization name MRC London Institute of Medical Sciences
Department Bioinformatics Core
Street address Hammersmith Hospital Campus, Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM4589734 Control diet wild-type liver_sample1
GSM4589735 Control diet wild-type liver_sample2
GSM4589736 Control diet wild-type liver_sample3
This SubSeries is part of SuperSeries:
GSE151753 Characterization of the role of RBFOX2 in the liver
Relations
BioProject PRJNA637086
SRA SRP265846

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151748_Cd.WT.Rbox2KO.GeneCounts.csv.gz 436.0 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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