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Series GSE151797 Query DataSets for GSE151797
Status Public on Oct 01, 2020
Title The shift from early to late types of ribosomes in zebrafish development involves changes at a subset of rRNA 2’-O-Me sites
Organism Danio rerio
Experiment type Other
Summary A sequencing-based profiling method (RiboMeth-seq) for ribose methylations was used to study methylation patterns during Zebrafish (Danio rerio) development
 
Overall design All samples were analyzed in biological triplicates, except for adult tail (trunk) that was in duplicate.
 
Contributor(s) Ramachandran S, Krogh N, Jørgensen TE, Johansen SD, Nielsen H, Babiak I
Citation(s) 32912962
Submission date Jun 04, 2020
Last update date Oct 02, 2020
Contact name Nicolai Krogh
E-mail(s) nicolaikj@sund.ku.dk
Organization name University of Copenhagen
Department Department of Cellular and Molecular Medicine
Lab RNA Group - Prof. Henrik Nielsen
Street address Blegdamsvej 3B
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (2)
GPL24059 Ion Torrent Proton (Danio rerio)
GPL28630 Ion Torrent S5 (Danio rerio)
Samples (18)
GSM4591049 Unf_egg_1
GSM4591050 Unf_egg_2
GSM4591051 Unf_egg_3
Relations
BioProject PRJNA637293
SRA SRP265951

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151797_Reference_sequence.fa.gz 3.1 Kb (ftp)(http) FA
GSE151797_Ribo_meth_seq_results.xlsx 5.7 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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