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Series GSE151824 Query DataSets for GSE151824
Status Public on Dec 07, 2020
Title Spatiotemporal sequence of mesoderm and endoderm lineage segregation during mouse gastrulation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Anterior mesoderm (AM) and definitive endoderm (DE) progenitors represent the earliest embryonic cell types that are specified during germ layer formation at the primitive streak (PS) of the mouse embryo. Genetic experiments indicate that both lineages segregate from Eomes expressing progenitors in response to different NODAL signaling levels. However, the precise spatiotemporal pattern of the emergence of these cell types and molecular details of lineage segregation remain unexplored. We combined genetic fate labeling and imaging approaches with single cell RNA sequencing (scRNA-seq) to follow the transcriptional identities and define lineage trajectories of Eomes dependent cell types. Accordingly, all cells moving through the PS during the first day of gastrulation express Eomes AM and DE specification occurs before cells leave the PS from Eomes positive progenitors in a distinct spatiotemporal pattern. ScRNA-seq analysis further suggest the immediate and complete separation of AM and DE lineages from Eomes expressing cells as last common bipotential progenitor.
 
Overall design Single cell RNA sequencing was performed on 576 hand-picked mouse embryonic cells at embryonic day 6.75 and 1172 FACS sorted cells from mouse embryos at embryonic day 7.5. Single-cell RNA sequencing was performed using the CEL-Seq2 protocol for hand-picked cells and mCEL-Seq2 protocol, an automated and miniaturized version of CEL-Seq2 for FACS-sorted cells (Hashimshony et al., 2016; Herman et al., 2018).
 
Contributor(s) Probst S, Sagar -, Gruen D, Arnold SJ
Citation(s) 33199445
Submission date Jun 04, 2020
Last update date Dec 14, 2020
Contact name Sagar -
E-mail(s) sagar@uniklinik-freiburg.de
Organization name University Medical Center Freiburg
Department Department of Internal Medicine II
Lab Sagar
Street address Hugstetter Stra├če 55
City Freiburg
ZIP/Postal code 79106
Country Germany
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (18)
GSM4591477 mouse_embryo_e6.75_handpickedcells_1_10
GSM4591478 mouse_embryo_e6.75_handpickedcells_1_11
GSM4591479 mouse_embryo_e6.75_handpickedcells_2_12
Relations
BioProject PRJNA637375
SRA SRP266184

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151824_RAW.tar 11.6 Mb (http)(custom) TAR (of CSV)
GSE151824_celseq_barcodes.192.txt.gz 910 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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