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Series GSE152433 Query DataSets for GSE152433
Status Public on Oct 01, 2020
Title Rapid and efficient conversion of common marmoset fibroblasts into mature and functional neurons by overexpression of ASCL1 and microRNA-9/9*-124
Organism Callithrix jacchus
Experiment type Expression profiling by high throughput sequencing
Summary The common marmoset (marmoset; Callithrix jacchus) has been attracting much attention especially in the research fields of biomedical science and neuroscience, because of its potential to recapitulate the complex and multidimensional phenotypes of human diseases. Taking these advantages, several transgenic models have been reported so far. However, there remain several issues such as (i) it takes years to generate the late-onset disease models, and (ii) the onset age and severity of phenotypes can vary among individual animals due to their differences in the genetic background. In the present study, we established an efficient and rapid direct neuronal induction method (induced Neuron; iN) from embryonic and adult marmoset fibroblasts. This iN method is a minimally invasive approach to investigate cellular-level phenotypes in the marmoset brain. We overexpressed microRNA-9/9*-124 and a transcription factor ASCL1 in fibroblasts with a small molecule cocktail that ameliorates neuronal induction. The resultant iN cells from both embryonic and adult marmoset fibroblasts showed standard neuronal characteristic within 2 weeks, including neuronal specific gene expression and neuronal membrane spontaneous firing activity. Thus, this novel neuronal induction method may offer a new tool for investigating neurological phenotypes in vitro without collecting living brain tissue in non-human primate neurological disease models.
 
Overall design RNA seq of marmoset fibroblasts and iNs
 
Contributor(s) Nemoto A, Yoshimatsu S, Okano H
Citation(s) 33375083
Submission date Jun 14, 2020
Last update date Dec 31, 2020
Contact name Sho Yoshimatsu
E-mail(s) yoshima@a7.keio.jp
Organization name Keio University School of Medicine
Department Physiology
Lab Hideyuki Okano's Lab
Street address 35 Shinanomachi
City Shinjuku
State/province Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platforms (1)
GPL28659 HiSeq X Ten (Callithrix jacchus)
Samples (10)
GSM4615562 E01F_mA_1
GSM4615563 E01F_mA_2
GSM4615564 E02M_mA_1
Relations
BioProject PRJNA639333
SRA SRP267240

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152433_RAW.tar 24.4 Mb (http)(custom) TAR (of TXT)
GSE152433_STAR_allcount_Nemoto2020.txt.gz 2.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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