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Series GSE152717 Query DataSets for GSE152717
Status Public on Jun 18, 2020
Title Genome-wide association study of body weights in Hu sheep
Organism Ovis aries
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Body weight (BW) is a critical economic trait for meat production in sheep. The current study aimed to perform a genome-wide association study (GWAS) to detect significant single-nucleotide polymorphisms (SNPs) that are associated with BW in Hu sheep.
 
Overall design The 240 Hu sheep selected for the study were from the parent (G1) and progeny (G2) of Hu sheep nucleus herd Culture Department in Huzhou Taihu Lake Culture Cooperative. BW measurements, including birth weight, weaning weight, 6-month weight, and yearling weight, were taken in a quiet, relaxed state in the two nucleus herds of Hu sheep. Genotyping of individual SNPs was performed using the Ovine SNP50BeadChip
 
Contributor(s) Cao Y, Song X
Citation(s) 32719712, 34093644
Submission date Jun 17, 2020
Last update date Jun 09, 2021
Contact name cao yuhao
E-mail(s) caoyuhao@nbu.edu.cn
Organization name Medical School of Ningbo University
Street address 818 Fenghua Road, Jiangbei District, Ningbo City, Zhejiang Province
City Ningbo
State/province Zhejiang Province
ZIP/Postal code 315211
Country China
 
Platforms (1)
GPL11359 OvineSNP50 BeadChip
Samples (240)
GSM4624698 Blood samples 1414055
GSM4624699 Blood samples 1414120
GSM4624700 Blood samples 1414060
Relations
BioProject PRJNA640179

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152717_Matrix_processed.xlsx 602.5 Mb (ftp)(http) XLSX
GSE152717_Matrix_signal_intensities.xlsx 439.8 Mb (ftp)(http) XLSX
GSE152717_Phenotype_Information_3.xlsx 29.7 Kb (ftp)(http) XLSX
GSE152717_RAW.tar 187.6 Mb (http)(custom) TAR (of IDAT)
GSE152717_SNP_Table.txt.gz 5.3 Mb (ftp)(http) TXT
GSE152717_body_weight_effects.txt.gz 20.0 Mb (ftp)(http) TXT
GSE152717_body_weight_stats.xlsx 83.8 Mb (ftp)(http) XLSX
GSE152717_ovinesnp50-Illumina_probe_identifiers.csv.gz 4.9 Mb (ftp)(http) CSV
GSE152717_processed.txt.gz 56.8 Mb (ftp)(http) TXT
GSE152717_signal.txt.gz 168.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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