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| Status |
Public on Sep 25, 2020 |
| Title |
Transcriptomic analysis of APC knock down HCEC 1CT cells compared to the wild type HCEC 1CT cells. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In order to investigate sophisticated events during cancer initiation, we established early colorectal cancer development model. We performed scRNA-seq and analyzed the scRNA-seq dataset. scRNA-seq was conducted at 3- and 7-days after transduction of shRNA targeting APC (shAPC) and scrambled shRNA (shScr) on HCEC 1CT cells.
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| |
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| Overall design |
scRNA-Seq of the shScr and shAPC cell lines in hCEC 1CT cells
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| Contributor(s) |
Choi J, Hwang CY, Gong J, Lee S, Cho K |
| Citation(s) |
33133158 |
| |
| Submission date |
Jun 18, 2020 |
| Last update date |
May 31, 2024 |
| Contact name |
Jeong-Ryeol Gong |
| E-mail(s) |
jrgong@kaist.ac.kr
|
| Organization name |
KAIST
|
| Lab |
SBIE
|
| Street address |
291, Daehak-ro
|
| City |
Yuseong-gu |
| State/province |
Daejeon |
| ZIP/Postal code |
34141 |
| Country |
South Korea |
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| Platforms (1) |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE152746 |
APC knock down HCEC 1CT cells compared to the wild type HCEC 1CT cells |
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| Relations |
| BioProject |
PRJNA640318 |
| SRA |
SRP267822 |
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