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Series GSE152802 Query DataSets for GSE152802
Status Public on Dec 25, 2020
Title A phase 1 study of guadecitabine plus cisplatin in platinum refractory germ cell tumors [Methylation]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Germ cell tumors (GCTs) can be cured with cisplatin-based therapy, although a clinically significant number of patents are refractory and die of progressive disease. Based on preclinical studies indicating that refractory testicular GCTs are hypersensitive to hypomethylating agents (HMA), we conducted a phase I trial [NCT02429466] of the next-generation HMA guadecitabine (SGI-110) in combination with cisplatin in patients with recurrent, cisplatin-resistant GCTs. The primary endpoint was safety and toxicity including DLT and MTD. A total of 14 patients were enrolled. The majority of patients were heavily pretreated. MTD was determined to be 30 mg/m2 guadecitabine followed by cisplatin 100 mg/m2. DLTs were neutropenia and thrombocytopenia. Three patients had partial responses by RECIST criteria, two of these patients qualified as complete responses by serum tumor marker criteria with survival of 16 and 26 months. Three patients also had stable disease for an overall response rate of 23% and clinical benefit rate of 46%. Genome-wide analysis pre- and post-guadecitabine indicated dramatic and widespread global DNA demethylation in cell-free plasma samples including in the promoters of genes of cancer related pathways. In summary, the combination of guadecitabine followed by cisplatin was tolerable and demonstrated biological activity in patients with platinum refractory GCTs.
 
Overall design Tumor Biopsy was obtained from patient at baseline C1D1 (pretreatment; prior to first 30 mg/m2 quadecitabine dose) and then on C1D8 (posttreatment; after 5 consecutive doses of guadecitabine and just prior to cisplatin). Bisulphite converted DNA from the 2 samples were hybridised to the Infinium MethylationEPIC beadchip array
 
Contributor(s) Fazal Z, Spinella M
Citation(s) 33135391
Submission date Jun 18, 2020
Last update date Feb 08, 2021
Contact name Michael Spinella
E-mail(s) spinella@illinois.edu
Organization name University of Illinois at Urbana-Champaign
Department Comparative Biosciences
Street address 2001 S Lincoln Ave
City Urbana
State/province IL
ZIP/Postal code 61801-2325
Country USA
 
Platforms (1)
GPL23976 Illumina Infinium HumanMethylation850 BeadChip
Samples (2)
GSM4626737 Pre guadecitabine treatment
GSM4626738 Post guadecitabine treatment
Relations
BioProject PRJNA640431

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152802_MatrixSignalIntensities.xlsx 50.4 Mb (ftp)(http) XLSX
GSE152802_RAW.tar 27.7 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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