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Series GSE153420 Query DataSets for GSE153420
Status Public on Sep 01, 2021
Title Gene profiles of Chinese Spring and CDC commander during embryogenesis
Organisms Triticum aestivum; Triticum turgidum
Experiment type Expression profiling by high throughput sequencing
Summary We present an atlas of global gene expression covering embryo, endosperm and seed coat development in Chinese Spring and CDC commander, providing insights into the evolution of gene expression in embryogenesis and grain development of hexaploid and tetraploid wheat species.
 
Overall design We investigate the dynamics and evolution of gene expression throughout seven stages of embryo development (including the two cell, pre-embryo, transition, leaf early, leaf middle, leaf late and mature embryo), two stages of endosperm (transition stage endosperm and leaf late stage endosperm), and one pericarp stage (leaf early stage pericarp) across Chinese Spring and CDC commander, two replicates for each stage.
 
Contributor(s) Gao P, Xiang D, Datla R
Citation(s) 33706417
Submission date Jun 28, 2020
Last update date Sep 01, 2021
Contact name Peng Gao
E-mail(s) peng.gao@agr.gc.ca
Organization name Agriculture and Agri-Food Canada
Street address 107 Science Place
City Saskatoon
State/province Saskatchewan
ZIP/Postal code S7N 0X2
Country Canada
 
Platforms (2)
GPL17701 Illumina HiSeq 2000 (Triticum aestivum)
GPL18539 Illumina HiSeq 2000 (Triticum turgidum)
Samples (40)
GSM4644005 CSW11 two cell stageEmbryo replicate-1
GSM4644006 CSW12 preembryo stageEmbryo replicate-1
GSM4644007 CSW17 mature stageEmbryo replicate-1
Relations
BioProject PRJNA642414
SRA SRP269080

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153420_Rawcount.xlsx 19.8 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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