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Series GSE153435 Query DataSets for GSE153435
Status Public on Dec 07, 2020
Title Single cells RNA-Seq of CD45+ cells during Staphylococcus aureus craniotomy infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single cells RNA-Seq of CD45+ cells during Staphylococcus aureus craniotomy infection
 
Overall design CD45+ cells were isolated from the brain, subcutaneous galea, bone flap, and blood at day 7 post-infection by FACS, whereupon single cell RNA sequencing was performed using a 10X Genomics platform
 
Contributor(s) Chris H, Cortney H, Tammy K
Citation(s) 33419769
Submission date Jun 28, 2020
Last update date Mar 08, 2021
Contact name Meng Niu
E-mail(s) vincentnue@gmail.com
Phone 4025595925
Organization name University of Nebraska Medical Center
Department Department of Neurological sciences
Street address 42nd and Emile
City OMAHA
State/province NE
ZIP/Postal code 68198
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM4644234 Brain
GSM4644235 Galea
GSM4644236 Bone flap
Relations
BioProject PRJNA642646
SRA SRP269096

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153435_RAW.tar 92.5 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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