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Series GSE153992 Query DataSets for GSE153992
Status Public on Jul 08, 2020
Title Microbiota alteration is associated with the development of stress-induced despair behavior
Organism Mus musculus
Experiment type Other
Summary Depressive disorders often run in families, which, in addition to the genetic component, may point to the microbiome as a causative agent. Here, we employed a combination of behavioral, molecular and computational techniques to test the role of the microbiota in mediating despair behavior. In chronically stressed mice displaying despair behavior, we found that the microbiota composition and the metabolic signature dramatically change. Specifically, we observed reduced Lactobacillus and increased circulating kynurenine levels as the most prominent changes in stressed mice. Restoring intestinal Lactobacillus levels was sufficient to improve the metabolic alterations and behavioral abnormalities. Mechanistically, we identified that Lactobacillus-derived reactive oxygen species may suppress host kynurenine metabolism, by inhibiting the expression of the metabolizing enzyme, IDO1, in the intestine. Moreover, maintaining elevated kynurenine levels during Lactobacillus supplementation diminished the treatment benefits. Collectively, our data provide a mechanistic scenario for how a microbiota player (Lactobacillus) may contribute to regulating metabolism and resilience during stress.
 
Overall design Mice were either wild type or SCID genotype and were either kept naïve or treated with an EAE or chronic stress protocol as described in doi: 10.1038/srep43859. Fecal samples were taken at multiple time points after commencement of treatment.

Sequencing performed at UVa Genome Analysis & Technology Core,
Office of Research Core Administration.
University of Virginia Health System,
P.O. Box 800741,
Charlottesville, VA 22908-0741
 
Contributor(s) Marin IA, Gaultier A
Citation(s) 28266612
Submission date Jul 07, 2020
Last update date Sep 16, 2020
Contact name David Michael Johanson
E-mail(s) dmj6ab@virginia.edu
Phone 3307327182
Organization name UVa School of Medicine
Department Department of Neuroscience
Lab UVa Neuroscience Bioinformatics
Street address 200 Jeanette Lancaster Way
City Charlottesville
State/province VA
ZIP/Postal code 22903
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (104)
GSM4661467 Sample 1_WT.1L
GSM4661468 Sample 2_WT.1R
GSM4661469 Sample 4_WT.2R
Relations
BioProject PRJNA644675
SRA SRP270856

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153992_final_processed_data_file.csv.gz 42.8 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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