|
| Status |
Public on Sep 09, 2022 |
| Title |
Sea anemone single cell tissue profiling [scRNA-seq] |
| Organism |
Nematostella vectensis |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Sub-adult tissue pieces were processed into single cell RNA sequencing libraries in order to catalog spatial information and cell type distribution
|
| |
|
| Overall design |
Sub-adult Nematostella vectensis were dissected into four tissue pieces and dissociated into single cell suspensions that were loaded into a 10x Genomics Chromium Single Cell Controller
|
| |
|
| Contributor(s) |
Cole AG, Technau U, Steger J |
| Citation(s) |
36130520, 36990990 |
| |
| Submission date |
Jul 09, 2020 |
| Last update date |
Apr 04, 2023 |
| Contact name |
Alison G Cole |
| Organization name |
University of Vienna
|
| Department |
Neurosciences and Developmental Biology
|
| Street address |
Djerassiplatz 1
|
| City |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (1) |
| GPL23029 |
Illumina NextSeq 500 (Nematostella vectensis) |
|
| Samples (4)
|
| GSM4663943 |
Nematostella vectensis Sub-adult tentacle single cell RNA sequencing run 1 |
| GSM4663944 |
Nematostella vectensis Sub-adult mesentery single cell RNA sequencing run 1 |
| GSM4663945 |
Nematostella vectensis Sub-adult pharynx single cell RNA sequencing run 1 |
| GSM4663946 |
Nematostella vectensis Sub-adult bodywall single cell RNA sequencing run 1 |
|
| This SubSeries is part of SuperSeries: |
| GSE154477 |
Transcriptomic profiling of sea anemone tissues |
|
| Relations |
| BioProject |
PRJNA645134 |
| SRA |
SRP271116 |
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