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Series GSE154393 Query DataSets for GSE154393
Status Public on Apr 28, 2021
Title Dual RNA-seq transcriptome analysis of chicken macrophage-like cells (HD11) infected in vitro with Eimeria tenella
Organisms Eimeria tenella; Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary In order to elucidate the infection mechanisms of Eimeria tenella and the chicken immune response, chicken macrophage cell cultures of cell line HD-11 were infected with Eimeria tenella strain Hougton sporozoites. Samples were taken at 0, 2, 4, 12, 24, 48 and 72 hours post-infection and, purified and mRNA sequenced. A dual-RNA seq analysis was carried out, comparing the expression of infected chicken macrophages with uninfected ones at the same time points post-infection and comparing E. tenella samples during the infection with a sample of pure sporozoites. The results show a variety of response signals in the chicken, both previously known and unknown, as well as a clear role for different sets of SAG and MIC proteins for sporozoites and merozoites of E. tenella
 
Overall design mRNA profiles of chicken macrophage cells, both uninfected and infected with Eimeria tenella sporozoites
 
Contributor(s) Sigurðarson Sandholt A, Xu F, Söderlund R, Lundén A, Troell K, Svärd SG, Wattrang E
Citation(s) 33536090
Submission date Jul 14, 2020
Last update date Apr 28, 2021
Contact name Arnar Kari Sigurdarson Sandholt
E-mail(s) a.k.sigurdarsonsandholt@uu.nl
Organization name Utrecht University
Department IRAS
Street address Yalelaan 2
City Utrecht
ZIP/Postal code 3584 CM
Country Netherlands
 
Platforms (3)
GPL19005 Illumina HiSeq 2500 (Gallus gallus)
GPL28863 Illumina HiSeq 2500 (Eimeria tenella; Gallus gallus)
GPL28864 Illumina HiSeq 2500 (Eimeria tenella)
Samples (39)
GSM4670332 5_S21: Uninfected 2h replicate 1
GSM4670333 6_S22: Infected 2h replicate 1
GSM4670334 1_S17: Uninfected 4h replicate 1
Relations
BioProject PRJNA646180
SRA SRP271757

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154393_chicken_counts.csv.gz 1.1 Mb (ftp)(http) CSV
GSE154393_chicken_counts_norm.csv.gz 3.7 Mb (ftp)(http) CSV
GSE154393_eimeria_counts.csv.gz 241.8 Kb (ftp)(http) CSV
GSE154393_eimeria_counts_norm.csv.gz 501.4 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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