|
| Status |
Public on Oct 01, 2020 |
| Title |
Dual RNAseq analysis of THP1 macrophages infected by AIEC LF82 bacteria |
| Organisms |
Homo sapiens; Escherichia coli LF82 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
AIEC are crohn disease related bacteria, they can survive and growth within macrophages mature lysosomes. To characterise the Human and bacterial pathways involved in this adaptation we performed Dual RNAseq
|
| |
|
| Overall design |
Examination of bacterial and Human transcriptomes 1h and 6h post infection. Examination of bacterial and macrophage transcriptomes in the absence of infection
|
| |
|
| Contributor(s) |
Espéli O, Demarre G, Wery M, Morillon A |
| Citation missing |
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| |
| Submission date |
Jul 17, 2020 |
| Last update date |
Oct 01, 2020 |
| Contact name |
Olivier Espeli |
| E-mail(s) |
olivier.espeli@college-de-france.fr
|
| Phone |
33144271249
|
| Organization name |
College de France
|
| Department |
CIRB
|
| Street address |
11 place Marcelin Berthelot
|
| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
| |
|
| Platforms (3) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL20215 |
Illumina HiSeq 2500 (Escherichia coli LF82) |
| GPL28886 |
Illumina HiSeq 2500 (Escherichia coli LF82; Homo sapiens) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA646949 |
| SRA |
SRP272386 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE154648_DEseq_B1_B6.xlsx |
389.3 Kb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_B1_MB1.xlsx |
664.2 Kb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_B1_MB6.xlsx |
386.7 Kb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_B6_MB1.xlsx |
382.2 Kb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_B6_MB6.xlsx |
385.4 Kb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_M1_M6_human.xlsx |
2.4 Mb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_M1_MB1_human.xlsx |
2.7 Mb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_M6_MB6_human.xlsx |
2.7 Mb |
(ftp)(http) |
XLSX |
| GSE154648_DEseq_MB1_MB6.xlsx |
374.7 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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