|
| Status |
Public on Nov 23, 2020 |
| Title |
Transcriptome profiling of hydrogen-oxidizing Acidithiobacillus ferrooxidans |
| Organism |
Acidithiobacillus ferrooxidans |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The study identified a total of 3169 gene transcripts (98.4% coverage). By comparing the anaerobic versus aerobic H2-oxidizing At. ferrooxidans cultures, a total of 371 DEGs were found. Of these, 168 DEGs were increased significantly during the aerobic growth on H2 (with O2 as the sole electron acceptor), while 203 DEGs increased significantly during anaerobic growth on H2 (with Fe3+ as the sole electron acceptor).
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| |
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| Overall design |
Transcriptome profiling of gene expression during aerobic and anaerobic growth of Acidithiobacillus ferrooxidans cells on hydrogen.
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| |
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| Contributor(s) |
Kucera J, Lochman J, Bouchal P, Pakostova E, Mikulasek K, Hedrich S, Janiczek O, Mandl M, Johnson DB |
| Citation(s) |
33329503 |
| |
| Submission date |
Jul 21, 2020 |
| Last update date |
Feb 22, 2021 |
| Contact name |
Jiri Kucera |
| E-mail(s) |
jiri.kucera@sci.muni.cz
|
| Organization name |
Masaryk University
|
| Department |
Department of Biochemistry
|
| Street address |
Kamenice 753/5
|
| City |
Brno |
| ZIP/Postal code |
625 00 |
| Country |
Czech Republic |
| |
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| Platforms (1) |
| GPL28899 |
Illumina MiSeq (Acidithiobacillus ferrooxidans) |
|
| Samples (6)
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| Relations |
| BioProject |
PRJNA647821 |
| SRA |
SRP273078 |
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