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Series GSE154911 Query DataSets for GSE154911
Status Public on Jul 23, 2020
Title Host immune response against the emerging fungal pathogen Candida auris: transcriptional and functional insights
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Candida auris is amongst the most important emerging fungal pathogens, yet mechanistic insights in its immune recognition and control are lacking. Here, we integrate transcriptional and functional immune cell profiling to uncover innate anti-C. auris defense mechanisms. C. auris induces a specific transcriptome in human mononuclear cells, a stronger cytokine response compared to C. albicans, but a lower macrophage lysis capacity. C. auris-induced innate immune activation is mediated through recognition of C-type lectin receptors, mainly elicited by structurally unique C. auris mannoproteins. In in-vivo experimental models of disseminated candidiasis, C. auris was less virulent than C. albicans. Collectively, these results demonstrate that C. auris is a strong inducer of innate host defense and identify possible targets for adjuvant immunotherapy.
 
Overall design RNAsequencing profiles of PBMCs stimulated for 4h and 24h with live C. albicans and C. auris and their cell wall components

Treatment definitions:

RPMI: media control
calb_live : PBMCs stimulated with C. albicans live
calb_man: PBMCs stimulated with C. albicans-purified mannan
calb_bg: PBMCs stimulated with C. albicans-purified beta glucan
caur_KTClive: PBMCs stimulated with C. auris live
caur_KTCman: PBMCs stimulated with C. auris-purified mannan
caur_KTCbg: PBMCs stimulated with C. auris-purified beta glucan
 
Contributor(s) Bruno M, Kersten S, Hoischen A, Netea M
Citation(s) 32839538
Submission date Jul 22, 2020
Last update date Oct 22, 2020
Contact name Mariolina Bruno
Organization name Radboudumc
Department Experimental Internal Medicine
Street address Geert Grooteplein Zuid 10
City Nijmegen
ZIP/Postal code 6525GA
Country Netherlands
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (42)
GSM4683203 A1_RPMI_4hrs_100ng
GSM4683204 A2_calb_live_4hrs_100ng
GSM4683205 A3_calb_man_4hrs_100ng
Relations
BioProject PRJNA647871
SRA SRP273115

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154911_RAW.tar 9.6 Mb (http)(custom) TAR (of TXT)
GSE154911_counts_merge.csv.gz 773.0 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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