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Series GSE15567 Query DataSets for GSE15567
Status Public on Apr 11, 2009
Title Identification of transcription factor DAF-16 binding sites in C. elegans
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We identified the DNA binding sites of DAF-16 in transgenic line TJ356 (daf-16::gfp) that carries high-copy number daf-16. The expression pattern was examined through fluorescent microscopy. The binding sites were determined using chromatin immunoprecipitation with anti-GFP antibody and anti-POL II antibody followed by illumina high-throughput sequencing (ChIP-seq).

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Overall design Identification of DAF-16 binding sites at L4/Young adult stage when DAF-16 was highly overexpressed
Web link
Contributor(s) Zhong M, Niu W
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BioProject PRJNA63461
Submission date Apr 06, 2009
Last update date May 15, 2019
Contact name Flora Vaccarino
Organization name Yale University
Department Child Study Center
Lab Vaccarino
Street address 230 South Frontage Road
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
Platforms (1)
GPL9309 Illumina Genome Analyzer (Caenorhabditis elegans)
Samples (6)
GSM389646 DAF-16 L4/Young adult replicate 1 GFP
GSM389647 DAF-16 L4/Young adult replicate 1 POL II
GSM389648 DAF-16 L4/Young adult replicate 1 Input
SRA SRP000864

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15567_ELAND_PEAK_BED_README.txt 2.1 Kb (ftp)(http) TXT
GSE15567_RAW.tar 641.9 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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