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Series GSE156544 Query DataSets for GSE156544
Status Public on Jan 01, 2021
Title Epithelial response to IFN-γ promotes SARS-CoV-2 infection
Organism Homo sapiens
Experiment type Expression profiling by array
Summary SARS-CoV-2, the agent causing COVID-19, invades epithelial cells, including those of the respiratory and gastrointestinal mucosa, using angiotensin-converting enzyme-2 (ACE2) as a receptor. Subsequent inflammation can promote rapid virus clearance. However, severe cases of COVID-19 are characterized by an inefficient immune response that fails to clear infection. Using primary epithelial organoids from the colon, we explored how IFN-γ, a central antiviral mediator elevated in COVID-19, affects differentiation, ACE2 expression, and infectivity with SARS-CoV-2. ACE2 is mainly expressed by surface enterocytes of mouse and human colon. Inducing enterocyte differentiation in organoid culture resulted in increased ACE2 production. IFN-γ treatment promoted differentiation into mature KRT20+ enterocytes expressing high levels of ACE2. Similarly, IFN-γ promoted expression of ACE2 in human primary lung cells. IFN-y driven differentiation increased susceptibility to SARS-CoV-2 infection and electron microscopy revealed that the virus can efficiently complete its full life cycle in IFN-γ-treated enterocytes. Furthermore, infection-induced epithelial interferon signaling promoted enterocyte maturation and enhanced ACE2 expression. We reveal a mechanism by which IFN-y-driven inflammatory responses may increase susceptibility to SARS-CoV-2 and promote its replication.
 
Overall design Microarray experiments were performed as dual-color hybridizations on custom whole genome human 8 × 60K multipack microarrays (Agilent-048908). To compensate for dye-specific effects, a dye-reversal color-swap was applied.
 
Contributor(s) Sigal M, Heuberger J, Trimpert J, Osterrieder N, Meyer TF, Mollenkopf H
Citation(s) 33544398
Submission date Aug 20, 2020
Last update date Apr 06, 2021
Contact name Hans-Joachim Mollenkopf
E-mail(s) mollenkopf@mpiib-berlin.mpg.de
Phone +49 30 28460 482
Organization name Max-Planck-Institute for Infection Biology
Lab Microarray/Genomics Core Facility
Street address Charitéplatz 1
City Berlin
ZIP/Postal code 10117
Country Germany
 
Platforms (1)
GPL21272 Agilent-048908 8x60K whole genome incl V1-V2 linc BioVacSafe final 048908 [Feature Number version]
Samples (8)
GSM4733275 FM vs. FM+IFNg_rep1
GSM4733276 FM+IFNg vs. FM_rep1 dye swap
GSM4733277 FM vs. FM+IFNg_rep2
Relations
BioProject PRJNA658319

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156544_RAW.tar 167.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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