|
| Status |
Public on May 23, 2021 |
| Title |
TAZ-CAMTA1 vs TAZ4A expressing MS1 cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
TAZ-CAMTA1 is a defining genetic aberration in the vascular cancer epithelioid hemangioendothelioma. We studied the transcriptome of TAZ-CAMTA1 and compared it to that of control or activated TAZ (TAZ4A)-expressing endothelial cells. We utilized an immortalized, mouse endothelial cell line known as MS1. We present and make available the first RNA-sequencing data of TAZ-CAMTA1's transcriptome in endothelial cells
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| |
|
| Overall design |
mRNA sequencing of Ctrl, TAZ4A, and TAZ-CAMTA1 stably expressing MS1 cells
|
| |
|
| Contributor(s) |
Driskill J, Pan D |
| Citation(s) |
33766984 |
| Submission date |
Aug 24, 2020 |
| Last update date |
May 23, 2021 |
| Contact name |
Jordan Driskill |
| Organization name |
UT Southwestern
|
| Department |
Physiology
|
| Lab |
Duojia Pan
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75219 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA659043 |
| SRA |
SRP278671 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE156801_RAW.tar |
14.5 Mb |
(http)(custom) |
TAR (of TAB) |
| GSE156801_gencode.vM4_GENES_counts.all_comparisons.tab.gz |
4.2 Mb |
(ftp)(http) |
TAB |
| GSE156801_gencode.vM4_GENES_counts_normalized.counts.CPM.tab.gz |
1.1 Mb |
(ftp)(http) |
TAB |
| GSE156801_gencode.vM4_GENES_counts_normalized.counts.TPM.tab.gz |
1.5 Mb |
(ftp)(http) |
TAB |
| GSE156801_gencode.vM4_TRANSCRIPTS_counts_normalized.counts.CPM.tab.gz |
4.0 Mb |
(ftp)(http) |
TAB |
| GSE156801_gencode.vM4_TRANSCRIPTS_counts_normalized.counts.TPM.tab.gz |
5.2 Mb |
(ftp)(http) |
TAB |
| GSE156801_igenomes_known_GENES_counts.all_comparisons.tab.gz |
3.3 Mb |
(ftp)(http) |
TAB |
| GSE156801_igenomes_known_GENES_counts_normalized.counts.CPM.tab.gz |
1020.0 Kb |
(ftp)(http) |
TAB |
| GSE156801_igenomes_known_GENES_counts_normalized.counts.TPM.tab.gz |
1.2 Mb |
(ftp)(http) |
TAB |
| GSE156801_igenomes_known_TRANSCRIPTS_counts_normalized.counts.CPM.tab.gz |
1.3 Mb |
(ftp)(http) |
TAB |
| GSE156801_igenomes_known_TRANSCRIPTS_counts_normalized.counts.TPM.tab.gz |
1.7 Mb |
(ftp)(http) |
TAB |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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