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Series GSE156806 Query DataSets for GSE156806
Status Public on Oct 26, 2020
Title Gene expression of UC organoids and UC model organoids (long-term inflammation model) derived from human colonic organoids
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Gene expression changes of human colon orgnaoids by 60weeks of inflammatory stimulation in vitro (long-term inflammed organoids) and after 10weeks from the removal of stimulation (inflammation-removed organoids). GSEA analysis was performed about RNA1-9 (Organoids #1). For the reproducibility of the analysis, GSEA was performed in triplicate. The key molecule for long-term inflammation was extracted from RNA10-12 (Organoids #2).
The comparison of gene expression of organoids derived from normal(RNA1-3) and UC mucosa(RNA13-15). For the reproducibility, the analysis was performed in triplicate.
 
Overall design Long-term inflamed organoids vs normal organoids / Inflammation removed organoids vs normal organoids / UC orgnaoids vs normal organoids
 
Contributor(s) Tsuchiya K, Watanabe S
Citation(s) 33596306
Submission date Aug 24, 2020
Last update date Oct 02, 2021
Contact name Sho Watanabe
E-mail(s) swatgast@tmd.ac.jp
Organization name Tokyo medical and dental university
Department gastroenterology
Street address 1-5-45
City yushima bunnkyoku Tokyo
ZIP/Postal code 113-8510
Country Japan
 
Platforms (1)
GPL20844 Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version]
Samples (15)
GSM4744824 H.colon organoid#1 Inf(-) RNA1
GSM4744825 H.colon organoid#1 Inf(-) RNA2
GSM4744826 H.colon organoid#1 Inf(-) RNA3
Relations
BioProject PRJNA659053

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156806_RAW.tar 195.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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