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Series GSE157044 Query DataSets for GSE157044
Status Public on Sep 01, 2020
Title RNA-seq across 27 developmental stages in Sus scrofa skeletal muscle
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary To obtain an overview of the transcriptome landscape in developing pig skeletal muscle, 81 high-quality transcriptome libraries that covered 27 developmental stages (3 biological replicates per stage) in pig skeletal muscle were produced by strand-specific rRNA-depleted total RNA sequencing (RNA-seq). We generated 8.59 billion paired-end reads (150 bp × 2) covering 1.24 Tb of sequence for RNA-seq.
 
Overall design RNA-seq profiles of Sus scrofa skeletal muscles that covered 27 developmental stages.
 
Contributor(s) Tang Z
Citation(s) 33434283, 34811940
BioProject PRJNA486202
Submission date Aug 28, 2020
Last update date Feb 18, 2022
Contact name Zhonglin Tang
E-mail(s) tangzhonglin@caas.cn
Organization name Chinese Academy of Agricultural Sciences
Department Agricultural Genome Institute at Shenzhen
Street address No.7, Pengfei road, Dapeng District
City Shenzhen
State/province GuangDong
ZIP/Postal code 518100
Country China
 
Platforms (1)
GPL22918 HiSeq X Ten (Sus scrofa)
Samples (81)
GSM4751415 RNA-seq of Sus scrofa: skeletal muscle at E33, replicate1
GSM4751416 RNA-seq of Sus scrofa: skeletal muscle at E33, replicate2
GSM4751417 RNA-seq of Sus scrofa: skeletal muscle at E33, replicate3
This SubSeries is part of SuperSeries:
GSE157045 27 developmental stages in Sus scrofa skeletal muscle
Relations
SRA SRP158448

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157044_Landrance_muscle_FPKM.xlsx 18.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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